Book Club: The 10,000 Year Explosion pt. 6: Expansion

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Welcome back to the Book Club. Today we’re discussing chapter 6 of Cochran and Harpending’s The 10,000 Year Explosion: Expansions

The general assumption is that the winning advantage is cultural–that is to say, learned. Weapons, tactics, political organization, methods of agriculture: all is learned. The expansion of modern humans is the exception to the rule–most observers suspect that biological difference were the root cause of their advantage. … 

the assumption that more recent expansions are all driven by cultural factors is based on the notion that modern humans everywhere have essentially the same abilities. that’s a logical consequence of human evolutionary stasis” If humans have not undergone a significant amount of biological change since the expansion out of Africa, then people everywhere would have essentially the same potentials, and no group would have a biological advantage over its neighbors. But as we never tire of pointing out, there has been significant biological change during that period.

I remember a paper I wrote years ago (long before this blog) on South Korea’s meteoric economic rise. In those days you had to actually go to the library to do research, not just futz around on Wikipedia. My memory says the stacks were dimly lit, though that is probably just some romanticizing. 

I poured through volumes on 5 year economic plans, trying to figure out why South Korea’s were more successful than other nations’. Nothing stood out to me. Why this plan and not this plan? Did 5 or 10 years matter? 

I don’t remember what I eventually concluded, but it was probably something along the lines of “South Korea made good plans that worked.” 

People around these parts often criticize Jared Diamond for invoking environmental explanations while ignoring or directly counter-signaling their evolutionary implications, but Diamond was basically the first author I read who said anything that even remotely began to explain why some countries succeeded and others failed. 

Environment matters. Resources matter. Some peoples have long histories of civilization, others don’t. Korea has a decently long history. 

Diamond was one of many authors who broke me out of the habit of only looking at explicit things done by explicitly recognized governments, and at wider patterns of culture, history, and environment. It was while reading Peter Frost’s blog that I first encountered the phrase “gene-culture co-evolution,” which supplies the missing link. 

800px-National_IQ_per_country_-_estimates_by_Lynn_and_Vanhanen_2006
IQ by country

South Korea does well because 1. It’s not communist and 2. South Koreans are some of the smartest people in the world. 

I knew #1, but I could have saved myself a lot of time in the stacks if someone had just told me #2 instead of acting like SK’s economic success was a big mystery. 

The fact that every country was relatively poor before industrialization, and South Korea was particularly poor after a couple decades of warfare back and forth across the peninsula, obscures the nation’s historically high development. 

For example, the South Korean Examination system, Gwageo, was instituted in 788 (though it apparently didn’t become important until 958). Korea has had agriculture and literacy for a long time, with accompanying political and social organization. This probably has more to do with South Korea having a relatively easy time adopting the modern industrial economy than anything in particular in the governments’ plans. 

Cochran has an interesting post on his blog on Jared Diamond and Domestication: 

In fact, in my mind the real question is not why various peoples didn’t domesticate animals that we know were domesticable, but rather how anyone ever managed to domesticate the aurochs. At least twice. Imagine a longhorn on roids: they were big and aggressive, favorites in the Roman arena. … 

The idea is that at least some individual aurochs were not as hostile and fearful of humans as they ought to have been, because they were being manipulated by some parasite. … This would have made domestication a hell of a lot easier. …

The beef tape worm may not have made it through Beringia.  More generally, there were probably no parasites in the Americas that had some large mammal as intermediate host and Amerindians as the traditional definite host. 

They never mentioned parasites in gov class. 

Back to the book–I thought this was pretty interesting:

One sign of this reduced disease pressure is the unusual distribution of HLA alleles among Amerindians. the HLA system … is a group of genes that encode proteins expressed on the outer surfaces of cells. the immune system uses them to distinguish the self from non-self… their most important role is in infections disease. … 

HLA genes are among the most variable of all genes. … Because these genes are so variable, any two humans (other than identical twins) are almost certain to have a different set of them. … Natural selection therefore favors diversification of the HLA genes, and some alleles, though rare, have been persevered for a long time. In fact, some are 30 million years old, considerably older than Homo sapiens. …

But Amerindians didn’t have that diversity. Many tribes have a single HLA allele with a frequency of over 50 percent. … A careful analysis of global HLA diversity confirms continuing diversifying selection on HLA in most human populations but finds no evidence of any selection at all favoring diversity in HLA among Amerindians.

The results, of course, went very badly for the Indians–and allowed minuscule groups of Spaniards to conquer entire empires. 

The threat of European (and Asian and African) diseases wiping out native peoples continues, especially for “uncontacted” tribes. As the authors note, the Surui of Brazil numbered 800 when contacted in 1980, but only 200 in 1986, after tuberculosis had killed most of them. 

…in 1827, smallpox spared only 125 out of 1,600 Mandan Indians in what later became North Dakota.

The past is horrific. 

I find the history ancient exploration rather fascinating. Here is the frieze in Persepolis with the okapi and three Pygmies, from about 500 BC.

The authors quote Joao de Barros, a 16th century Portuguese historian: 

But it seems that for our sins, or for some inscrutable judgment of God, in all the entrances of this great Ethiopia we navigate along… He has placed a striking angel with a flaming sword of deadly fevers, who prevents us from penetrating into the interior to the springs of this garden, whence proceed these rivers of gold that flow to the sea in so many parts of our conquest.

Barros had a way with words. 

It wasn’t until quinine became widely available that Europeans had any meaningful success at conquering Africa–and even still, despite massive technological advantages, Europeans haven’t held the continent, nor have they made any significant, long-term demographic impact. 

EX-lactoseintolerance
Source: National Geographic

The book then segues into a discussion of the Indo-European expansion, which the authors suggest might have been due to the evolution of a lactase persistence gene. 

(Even though we usually refer to people as “lactose intolerance” and don’t regularly refer to people as “lactose tolerant,” it’s really tolerance that’s the oddity–most of the world’s population can’t digest lactose after childhood.

Lactase is the enzyme that breaks down lactose.)

Since the book was published, the Indo-European expansion has been traced genetically to the Yamnaya (not to be confused with the Yanomamo) people, located originally in the steppes north of the Caucasus mountains. (The Yamnaya and Kurgan cultures were, I believe, the same.) 

An interesting linguistic note: 

Uralic languages (the language family containing Finnish and Hungarian) appear to have had extensive contact with early Indo-European, and they may share a common ancestry. 

I hope these linguistic mysteries continue to be decoded. 

The authors claim that the Indo-Europeans didn’t make a huge genetic impact on Europe, practicing primarily elite dominance–but on the other hand, A Handful of Bronze-Age Men Could Have Fathered 2/3s of Europeans:

In a new study, we have added a piece to the puzzle: the Y chromosomes of the majority of European men can be traced back to just three individuals living between 3,500 and 7,300 years ago. How their lineages came to dominate Europe makes for interesting speculation. One possibility could be that their DNA rode across Europe on a wave of new culture brought by nomadic people from the Steppe known as the Yamnaya.

That’s all for now; see you next week.

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Book Club: The 10,000 Year Explosion: pt 5: Gene Flow

Genghis Khan, spreader of genes

Welcome back to the book club. Today we’re discussing Chapter 5 of The 10,000 Year Explosion, Gene Flow. In this chapter, Greg and Henry discuss some of the many ways genes can (and sometimes can’t) get around.

You know, sometimes it is difficult to think of something really interesting to say in reaction to something I’ve read. Sometimes I just think it is very interesting, and hope others find it so, too. This is one of those chapters.

So today I decided to read the papers cited in the chapter, plus a few more related papers on the subject.

High-Resolution SNPs and Microsatellite Haplotypes point to a single, Recent Entry of Native American Y Chromosomes into the Americas

Single-nucleotide polymorphism (SNP) analysis indicated that three major haplogroups, denoted as C, Q, and R, accounted for nearly 96% of Native American Y chromosomes. Haplogroups C and Q were deemed to represent early Native American founding Y chromosome lineages; however, most haplogroup R lineages present in Native Americans most likely came from recent admixture with Europeans. Although different phylogeographic and STR diversity patterns for the two major founding haplogroups previously led to the inference that they were carried from Asia to the Americas separately, the hypothesis of a single migration of a polymorphic founding population better fits our expanded database. Phylogenetic analyses of STR variation within haplogroups C and Q traced both lineages to a probable ancestral homeland in the vicinity of the Altai Mountains in Southwest Siberia. Divergence dates between the Altai plus North Asians versus the Native American population system ranged from 10,100 to 17,200 years for all lineages, precluding a very early entry into the Americas.

However, Asymmetric Male and Female Genetic Histories among Native Americans from Eastern North America

We found that sociocultural factors have played a more important role than language or geography in shaping the patterns of Y chromosome variation in eastern North America. Comparisons with previous mtDNA studies of the same samples demonstrate that male and female demographic histories differ substantially in this region. Postmarital residence patterns have strongly influenced genetic structure, with patrilocal and matrilocal populations showing different patterns of male and female gene flow. European contact also had a significant but sex-specific impact due to a high level of male-mediated European admixture. Finally, this study addresses long-standing questions about the history of Iroquoian populations by suggesting that the ancestral Iroquoian population lived in southeastern North America.

And in Mexico, your different racial mix has something to do with your risk of Type 2 Diabetes, but you know, race is a social construct or something:

Type 2 diabetes (T2D) is at least twice as prevalent in Native American populations as in populations of European ancestry, so admixture mapping is well suited to study the genetic basis of this complex disease. We have characterized the admixture proportions in a sample of 286 unrelated T2D patients and 275 controls from Mexico City and we discuss the implications of the results for admixture mapping studies. … The average proportions of Native American, European and, West African admixture were estimated as 65, 30, and 5%, respectively. The contributions of Native American ancestors to maternal and paternal lineages were estimated as 90 and 40%, respectively. In a logistic model with higher educational status as dependent variable, the odds ratio for higher educational status associated with an increase from 0 to 1 in European admixture proportions was 9.4 (95%, credible interval 3.8-22.6). This association of socioeconomic status with individual admixture proportion shows that genetic stratification in this population is paralleled, and possibly maintained, by socioeconomic stratification. The effective number of generations back to unadmixed ancestors was 6.7 (95% CI 5.7-8.0)…

In other words, Conquistador men had children with a lot of the local ladies. 

Oh hey, while we’re at it: 

The Genomic Landscape of Western South America: 

Studies of Native South American genetic diversity have helped to shed light on the peopling and differentiation of the continent, but available data are sparse for the major ecogeographic domains. These include the Pacific Coast, a potential early migration route; the Andes, home to the most expansive complex societies and to one of the most spoken indigenous language families of the continent (Quechua); and Amazonia, with its understudied population structure and rich cultural diversity. Here we explore the genetic structure of 177 individuals from these three domains, genotyped with the Affymetrix Human Origins array. We infer multiple sources of ancestry within the Native American ancestry component; one with clear predominance on the Coast and in the Andes, and at least two distinct substrates in neighboring Amazonia, with a previously undetected ancestry characteristic of northern Ecuador and Colombia. Amazonian populations are also involved in recent gene-flow with each other and across ecogeographic domains, which does not accord with the traditional view of small, isolated groups. Long distance genetic connections between speakers of the same language family suggest that languages had spread not by cultural contact alone. Finally, Native American populations admixed with post-Columbian European and African sources at different times, with few cases of prolonged isolation. 

In other news: 

Strong Selective Sweep Before 45,000 BP Displaced Archaic Admixture Across the X Chromosome

The X chromosome in non-African populations has less diversity and less Neanderthal introgression than expected. We analyzed X chromosome diversity across the globe and discovered seventeen chromosomal regions, where haplotypes of several hundred kilobases have recently reached high frequencies in non-African populations only. The selective sweeps must have occurred more than 45,000 years ago because the ancient Ust’-Ishim male also carries its expected proportion of these haplotypes. Surprisingly, the swept haplotypes are entirely devoid of Neanderthal introgression, which implies that a population without Neanderthal admixture contributed the swept haplotypes. It also implies that the sweeps must have happened after the main interbreeding event with Neanderthals about 55,000 BP. These swept haplotypes may thus be the only genetic remnants of an earlier out-of-Africa event.

Why not a later out-of-Africa event? Or a simultaneous event that just happened not to mate with Neanderthals? Or sweeps on the X chromosome that happened to remove Neanderthal DNA due to Neanderthal and X being really incompatible? I don’t know. 

The Neolithic Invasion of Europe:

Who are Europeans? Both prehistoric archaeology and, subsequently, classical population genetics have attempted to trace the ancestry of modern Europeans back to the first appearance of agriculture in the continent; however, the question has remained controversial. Classical population geneticists attributed the major pattern in the European gene pool to the demographic impact of Neolithic farmers dispersing from the Near East, but archaeological research has failed to uncover substantial evidence for the population growth that is supposed to have driven this process. … Both mitochondrial DNA and Y-chromosome analyses have indicated a contribution of Neolithic Near Eastern lineages to the gene pool of modern Europeans of around a quarter or less. This suggests that dispersals bringing the Neolithic to Europe may have been demographically minor and that contact and assimilation had an important role.

I wouldn’t call a quarter “minor.” But it is true that the Anatolian farming people who invaded Europe didn’t kill off all of the locals, and then later Europe was invaded by the non-Anatolian, Indo-European people. 

Revealing the prehistoric settling of Australia by Y chromosome and mtDNA analysis

(i) All Australian lineages are confirmed to fall within the mitochondrial founder branches M and N and the Y chromosomal founders C and F, which are associated with the exodus of modern humans from Africa ≈50–70,000 years ago. The analysis reveals no evidence for any archaic maternal or paternal lineages in Australians, despite some suggestively robust features in the Australian fossil record, thus weakening the argument for continuity with any earlier Homo erectus populations in Southeast Asia. (ii) The tree of complete mtDNA sequences shows that Aboriginal Australians are most closely related to the autochthonous populations of New Guinea/Melanesia, indicating that prehistoric Australia and New Guinea were occupied initially by one and the same Palaeolithic colonization event ≈50,000 years ago, … (iii) The deep mtDNA and Y chromosomal branching patterns between Australia and most other populations around the Indian Ocean point to a considerable isolation after the initial arrival. (iv) We detect only minor secondary gene flow into Australia, and this could have taken place before the land bridge between Australia and New Guinea was submerged ≈8,000 years ago…

Aboriginal Australian mitochondrial genome variation

Aboriginal Australians represent one of the oldest continuous cultures outside Africa, with evidence indicating that their ancestors arrived in the ancient landmass of Sahul (present-day New Guinea and Australia) ~55 thousand years ago. … We have further resolved known Aboriginal Australian mitochondrial haplogroups and discovered novel indigenous lineages by sequencing the mitogenomes of 127 contemporary Aboriginal Australians. In particular, the more common haplogroups observed in our dataset included M42a, M42c, S, P5 and P12, followed by rarer haplogroups M15, M16, N13, O, P3, P6 and P8. We propose some major phylogenetic rearrangements, such as in haplogroup P where we delinked P4a and P4b and redefined them as P4 (New Guinean) and P11 (Australian), respectively. Haplogroup P2b was identified as a novel clade potentially restricted to Torres Strait Islanders. Nearly all Aboriginal Australian mitochondrial haplogroups detected appear to be ancient, with no evidence of later introgression during the Holocene.

Meanwhile, in Indonesia

We find that recent population history within Indonesia is complex, and that populations from the Philippines made important genetic contributions in the early phases of the Austronesian expansion. Different, but interrelated processes, acted in the east and west. The Austronesian migration took several centuries to spread across the eastern part of the archipelago, where genetic admixture postdates the archeological signal. As with the Neolithic expansion further east in Oceania and in Europe, genetic mixing with local inhabitants in eastern Indonesia lagged behind the arrival of farming populations. In contrast, western Indonesia has a more complicated admixture history shaped by interactions with mainland Asian and Austronesian newcomers, which for some populations occurred more than once. Another layer of complexity in the west was introduced by genetic contact with South Asia and strong demographic events in isolated local groups.

I liked the quote from Jared Diamond (say what you will about him, I like Diamond. He at least tries hard to tackle difficult questions):  

“When I was living among Elopi tribespeople in west New Guinea and wanted to cross the territory of the neighboring Fayu tribe in order to reach a nearby mountain, the Elopis explained tome matter-of-factly that the Fayus would kill me if I tried. From a New Guinea perspective, it seemed so perfectly natural and self-explanatory. Of course the Fayus will kill any trespasser…”

This is why people often claim that we moderns are the WEIRDOs. 

Evidence that Alexander the Great got around (the world)–Y-Chromosomal Evidence for a Limited Greek Contribution to the Pathan population of Pakistan

Three Pakistani populations residing in northern Pakistan, the Burusho, Kalash and Pathan claim descent from Greek soldiers associated with Alexander’s invasion of southwest Asia. … In pairwise comparisons between the Greeks and the three Pakistani populations using genetic distance measures sensitive to recent events, the lowest distances were observed between the Greeks and the Pathans. Clade E3b1 lineages, which were frequent in the Greeks but not in Pakistan, were nevertheless observed in two Pathan individuals, one of whom shared a 16 Y-STR haplotype with the Greeks. The worldwide distribution of a shortened (9 Y-STR) version of this haplotype, determined from database information, was concentrated in Macedonia and Greece, suggesting an origin there. Although based on only a few unrelated descendants this provides strong evidence for a European origin for a small proportion of the Pathan Y chromosomes.

Of course, who can discuss genetic spread without mentioning that lord of men, Genghis Khan? 

We have identified a Y-chromosomal lineage with several unusual features. It was found in 16 populations throughout a large region of Asia, stretching from the Pacific to the Caspian Sea, and was present at high frequency: ∼8% of the men in this region carry it, and it thus makes up ∼0.5% of the world total. The pattern of variation within the lineage suggested that it originated in Mongolia ∼1,000 years ago. Such a rapid spread cannot have occurred by chance; it must have been a result of selection. The lineage is carried by likely male-line descendants of Genghis Khan, and we therefore propose that it has spread by a novel form of social selection resulting from their behavior.

“Novel” lol. 

And finally, Blue Eyes

Several studies have shown that the OCA2 locus is the major contributor to the human eye color variation. By linkage analysis of a large Danish family, we finemapped the blue eye color locus to a 166 Kbp region within the HERC2 gene. … The brown eye color allele of rs12913832 is highly conserved throughout a number of species. … One single haplotype, represented by six polymorphic SNPs covering half of the 3′ end of the HERC2 gene, was found in 155 blue-eyed individuals from Denmark, and in 5 and 2 blue-eyed individuals from Turkey and Jordan, respectively. Hence, our data suggest a common founder mutation in an OCA2 inhibiting regulatory element as the cause of blue eye color in humans. In addition, an LOD score of Z = 4.21 between hair color and D14S72 was obtained in the large family, indicating that RABGGTA is a candidate gene for hair color.

What about you? What did you think of this chapter?

Book Club: The 10,000 Year Explosion: pt 4 Agriculture

Welcome back to EvX’s Book Club. Today we’re discussing Chapter 4 of The 10,000 Year Explosion: Consequences of Agriculture.

A big one, of course, was plague–on a related note, Evidence for the Plague in Neolithic Farmers’ Teeth:

When they compared the DNA of the strain recovered from this cemetery to all published Y. pestis genomes, they found that it was the oldest (most basal) strain of the bacterium ever recovered. Using the molecular clock, they were able to estimate a timeline for the divergence and radiation of Y. pestis strains and tie these events together to make a new, testable model for the emergence and spread of this deadly human pathogen.

These analyses indicate that plague was not first spread across Europe by the massive migrations by the Yamnaya peoples from the central Eurasian steppe (around 4800 years ago)… Rascovan et al. calculated the date of the divergence of Y. pestis strains at between 6,000 and 5,000 years ago. This date implicates the mega-settlements of the Trypillia Culture as a possible origin point of Y. pestis. These mega-settlements, home to an estimated 10,000-20,000 people, were dense concentrations of people during that time period in Europe, with conditions ideal for the development of a pandemic.

The Cucuteni-Trypilia Culture flourished between the Carpathian Mountains and the Black Sea from 4800-3000 BC. It was a neolithic–that is, stone age–farming society with many large cities. Wikipedia gives a confused account of its demise:

According to some proponents of the Kurgan hypothesis of the origin of Proto-Indo-Europeans … the Cucuteni–Trypillia culture was destroyed by force. Arguing from archaeological and linguistic evidence, Gimbutas concluded that the people of the Kurgan culture (a term grouping the Yamnaya culture and its predecessors) … effectively destroyed the Cucuteni–Trypillia culture in a series of invasions undertaken during their expansion to the west. Based on this archaeological evidence Gimbutas saw distinct cultural differences between the patriarchal, warlike Kurgan culture and the more peaceful egalitarian Cucuteni–Trypillia culture, … which finally met extinction in a process visible in the progressing appearance of fortified settlements, hillforts and the graves of warrior-chieftains, as well as in the religious transformation from the matriarchy to patriarchy, in a correlated east–west movement.[26] In this, “the process of Indo-Europeanization was a cultural, not a physical, transformation and must be understood as a military victory in terms of successfully imposing a new administrative system, language, and religion upon the indigenous groups.[27]

How does it follow that the process was a cultural, not physical transformation? They got conquered.

In his 1989 book In Search of the Indo-Europeans, Irish-American archaeologist J. P. Mallory, summarising the three existing theories concerning the end of the Cucuteni–Trypillia culture, mentions that archaeological findings in the region indicate Kurgan (i.e. Yamnaya culture) settlements in the eastern part of the Cucuteni–Trypillia area, co-existing for some time with those of the Cucuteni–Trypillia.[4]Artifacts from both cultures found within each of their respective archaeological settlement sites attest to an open trade in goods for a period,[4] though he points out that the archaeological evidence clearly points to what he termed “a dark age,” its population seeking refuge in every direction except east. He cites evidence of the refugees having used caves, islands and hilltops (abandoning in the process 600–700 settlements) to argue for the possibility of a gradual transformation rather than an armed onslaught bringing about cultural extinction.[4]

How is “refugees hiding in caves” a “gradual transformation?” That sounds more like “people fleeing an invading army.”

The obvious issue with that theory is the limited common historical life-time between the Cucuteni–Trypillia (4800–3000 BC) and the Yamnaya culture (3300–2600 BC); given that the earliest archaeological findings of the Yamnaya culture are located in the VolgaDonbasin, not in the Dniester and Dnieper area where the cultures came in touch, while the Yamnaya culture came to its full extension in the Pontic steppe at the earliest around 3000 BC, the time the Cucuteni–Trypillia culture ended, thus indicating an extremely short survival after coming in contact with the Yamnaya culture.

How is that an issue? How long does Wikipedia think it takes to slaughter a city? It takes a few days. 300 years of contact is plenty for both trade and conquering.

Another contradicting indication is that the kurgans that replaced the traditional horizontal graves in the area now contain human remains of a fairly diversified skeletal type approximately ten centimetres taller on average than the previous population.[4]

What are we even contradicting? Sounds like they got conquered, slaughtered, and replaced.

Then Wikipedia suggests that maybe it was all just caused by the weather (which isn’t a terrible idea.) Drought weakened the agriculturalists and prompted the pastoralists to look for new grasslands for their herds. They invaded the agriculturalists’ areas because they were lush and good for growing grain, which the pastoralists’ cattle love eating. The already weakened agriculturalists couldn’t fight back.

ANYWAY. Lets get on with Greg and Henry’s account, The 10,000 Year Explosion:

The population expansion associated with farming increased crowding, while farming itself made people sedentary. Mountains of garbage and water supplies contaminated with human waste favored the spread of infectious disease. …

Most infectious diseases have a critical community size, a  number and concentration of people below which they cannot persist. The classic example is measles, which typically infects children and remains infectious for about ten days, after which the patient has lifelong immunity. In order for measles to survive, the virus that causes it, the paramyxovirus, must continually find unexposed victims–more children. Measles can only persist in a large, dense population: Populations that are too small or too spread out (under half a million in close proximity) fail to produce unexposed children fast enough, so the virus dies out.

Measles, bubonic plague, smallpox: all results of agriculture.

Chickenpox: not so much.

I wonder if people in the old Cucuteni–Trypillia area are particularly immune to bubonic plague, or if the successive waves of invading steppe nomads have done too much genetic replacement (slaughtering) for adaptations to stick around?

Harpending and Cochran then discuss malaria, which has had a big impact on human genomes (eg, sickle cell,) in the areas where malaria is common.

In general, the authors play it safe in the book–pointing to obvious cases of wide-scale genetic changes like sickle cell that are both undoubtable and have no obvious effect on personality or intelligence. It’s only in the chapter on Ashkenazi IQ that they touch on more controversial subjects, and then in a positive manner–it’s pleasant to think, “Why was Einstein so smart?” and less pleasant to think, “Why am I so dumb?”

However:

It’s time to address the old chestnut that biological differences among human populations are “superficial,” only skin-deep. It’s not true: We’re seeing genetically caused differences in all kinds of functions, and every such differences was important enough to cause a significant increase in fitness (number of offspring)–otherwise it wouldn’t have reached high frequency in just a few millennia.

As for skin color, Cochran and Harpending lean on the side of high-latitude lightening having been caused by agriculture, rather than mere sunlight levels:

Interestingly, the sets of changes driving light skin color in China are almost entirely different from those performing a similar function in Europe. …

Many of these changes seem to be quite recent. The mutation that appears to have the greatest effect on skin color among Europeans and neighboring peoples, a variant of SLC24A5, has spread with astonishing speed. Linkage disequilibrium… suggests that it came into existence about 5,800 years ago, but it has a frequency of 99 percent throughout Europe and is found at significant levels in North Africa, East Africa, and as far east as India and Ceylon. If it is indeed that recent, it must have had a huge selective advantage, perhaps as high as 20 percent. It would have spread so rapidly that, over a long lifetime a farmer could have noticed the change in appearance in his village.

Wow.

In humans, OAC2 … is a gene involved in the melanin pathway… Species of fish trapped in caves… lose their eyesight and become albinos over many generations. … Since we see changes in OCA2 in each [fish] case, however, there must have been some advantage in knocking out OCA2, at least in that underground environment. The advantage cannot like in increased UV absorption, since there’s no sunlight in those caves.

There are hints that knocking out OCA2, or at least reducing its activity, may he advantageous… in humans who can get away with it. We see a pattern that suggests that having one inactive copy of OCA2 is somehow favored even in some quite sunny regions. In southern Africa, a knocked-out version of OCA2 is fairly common: The gene frequency is over 1 percent.

And that’s an area with strong selection for dark skin.

A form of OCA2 albinism is common among the Navajo and other neighboring tribes, with gene frequencies as high as 4.5 percent. The same pattern appears in southern Mexico, eastern Panama, and southern Brazil. All of which suggests that heterozygotes…may ave some advantage.

Here is an article on the possibility of sexual selection for albinism among the Hopi.

So why do Europeans have such variety in eye and hair color?

Skeletons

The skeletal record clearly supports the idea that there has been rapid evolutionary change in humans over the past 10,000 years. The human skeleton has become more gracile–more lightly built–though more so in some populations than others. Our jaws have shrunk, our long bones have become lighter, and brow ridges have disappeared in most populations (with the notable exception of Australian Aborigines, who have also changed, but not as much; they still have brow ridges, and their skulls are about twice as thick as those of other peoples.)

This could be related to the high rates of interpersonal violence common in Australia until recently (thicker skulls are harder to break) or a result of interbreeding with Neanderthals and Denisovans. We don’t know what Denisovans looked like, but Neanderthals certainly are noted for their robust skulls.

Skull volume has decreased, apparently in all populations: In Europeans, volume is down about 10 percent from the high point about 20,000 years ago.

This seems like a bad thing. Except for mothers.

Some changes can be seen even over the past 1,000 years. English researchers recently compared skulls from people who died in the Black Death ([approximately] 650 years ago), from the crew of the Mary Rose,a  ship that sank in Tudor times ([approximately] 450 years ago) and from our contemporaries. The shape of the skull changed noticeably over that brief period–which is particularly interesting because we know there has been no massive population replacement in England over the past 700 years.

Hasn’t there been a general replacement of the lower classes by the upper classes? I think there was also a massive out-migration of English to other continents in the past five hundred years.

The height of the cranial vault of our contemporaries was about 15 percent larger than that of the earlier populations, and the part of the skull containing the frontal lobes was thus larger.

This is awkwardly phrased–I think the authors want the present tense–“the cranial vault of our contemporaries is…” Nevertheless, it’s an interesting study. (The frontal lobes control things like planning, language, and math.) 

We then proceed to the rather depressing Malthus section and the similar “elites massively out-breeding commoners due to war or taxation” section. You’re probably familiar with Genghis Khan by now. 

We’ve said that the top dogs usually had higher-than-average fertility, which is true, but there have been important exceptions… The most common mistake must have been living in cities, which have almost always been population sinks, mostly because of infectious disease. 

They’re still population sinks. Just look at Singapore. Or Tokyo. Or London. 

The case of silphium, a natural contraceptive and abortifacient eaten to extinction during the Classical era, bears an interesting parallel to our own society’s falling fertility rates. 

And of course, states domesticate their people: 

Farmers don’t benefit from competition between their domesticated animals or plants… Since the elites were in a very real sense raising peasants, just as peasants raised cows, there must have been a tendency for them to cull individuals who were more aggressive than average, which over time would have changed the frequencies of those alleles that induced such aggressiveness.

On the one hand, this is a very logical argument. On the other hand, it seems like people can turn on or off aggression to a certain degree–uber peaceful Japan was rampaging through China only 75 years ago, after all. 

Have humans been domesticated? 

(Note: the Indians captured by the Puritans during the Pequot War may have refused to endure the yoke, but they did practice agriculture–they raised corn, squash and beans, in typical style. Still, they probably had not endured under organized states for as long as the Puritans.)

There is then a fascinating discussion of the origins of the scientific revolution–an event I am rather fond of. 

Although we do not as yet fully understand the true causes of the scientific and industrial revolution, we must now consider the possibility that continuing human evolution contributed to that process. It could explain some of the odd historical patterns that we see.

Well, that’s enough for today. Let’s continue with Chapter 5 next week.

How about you? What are your thoughts on the book?

Book Club: The 10,000 Year Explosion pt. 2: Behavioral Modernity 

 

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Neanderthal skull

Welcome back to EvX’s book club. Today we’re discussing Cochran and Harpending’s The 10,000 Year Explosion: How Civilization Accelerated Human Evolution, chapter 2: The Neanderthal Within.

How did you like the chapter?

Unless I have missed a paper somewhere, this is a remarkable chapter, for The 10,000 Year Explosion was published in 2009, and the first Neanderthal genome showing more overlap with Europeans (and Asians) than Sub-Saharans was published in 2010. Greg and Henry did know of genetic evidence that humans have about 5% admixture from some archaic sister-species, but no one yet had evidence of which species, nor was there popular agreement on the subject. Many scientists still rejected the notion of Sapiens-Neanderthal interbreeding when Cochran and Harpending laid out their bold claim that not only had it happened, but it was a critical moment in human history, jump-starting the cultural cultural effervescence known as behavioral modernity.

Homo sapiens have been around for 300,000 years–give or take a hundred thousand–but for most of that time, we left behind rather few interesting artifacts. As the authors point out, we failed to develop agriculture during the Eemian interglacial (though we managed to develop agriculture at least 7 times, independently, during the current interglacial). Homo sapiens attempted to leave Africa several times before 70,000 years ago, but failed each time, either because they weren’t clever enough to survive in their new environment or couldn’t compete with existing hominins (ie, Neanderthals) in the area.

DBoAOVxWsAAYu6jSapiens’ technology didn’t do much interesting for the first couple hundred thousand years, either. Yet 70,000 years ago, sapiens did manage to leave Africa, displace the Neanderthals, spread into radically new climates, developed long distance trade and art, and eventually agriculture and everything we now enjoy here in the modern world.

According to Wikipedia, behavioral modernity includes:

Burial, fishing, art, self-decoration via jewelry or pigment, bone tools, sharp blades, hearths, multi-part tools, long-distance transportation of important items, and regionally distinct artifacts.

This leaves two important questions re: Cochran and Harpending’s theory. First, when exactly did behavioral modernity emerge, and second, was it a gradual transition or a sudden explosion?

Prehistoric art is tricky to date–and obviously did not always get preserved–but Blombos Cave, South Africa, currently contains our earliest piece, from about 70,000-100,000 years ago. The Blombos art is not figurative–it’s patterns of crosshatched lines–but there’s a fair amount of it. Blombos appears to have been an ochre-processing spot (the art is made with or on pieces of ochre) littered with thousands of leftover scraps. According to Wikipedia:

In 2008 an ochre processing workshop consisting of two toolkits was uncovered in the 100,000-year-old levels at Blombos Cave, South Africa.[3] Analysis shows that a liquefied pigment-rich mixture was produced and stored in the shells of two Haliotis midae (abalone), and that ochre, bone, charcoal, grindstones and hammer-stones also formed a composite part of the toolkits. As both toolkits were left in situ, and as there are few other archaeological remains in the same layer, it seems the site was used primarily as a workshop and was abandoned shortly after the pigment-rich compounds were made. Dune sand then blew into the cave from the outside, encapsulated the toolkits and by happenstance ensured their preservation before the next occupants arrived, possibly several decades or centuries later.

The application or use of the compound is not self-evident. No resins or wax were detected that might indicate it was an adhesive for hafting.

70 beads made from shells with holes drilled in them have also been found at Blombos.

Blombos is interesting, but the “art” is not actually very good–and we can’t say for sure that it was meant as art at all. Maybe the locals were just scraping the rocks to get the ochre off, for whatever purposes.

Indisputable art emerges a little later, around 40,000 years ago–simultaneously, it appears, in Europe, Asia, Australia, and Indonesia. The archaeology of Africa is less well-documented (in part because things just disintegrate quickly in some areas), but the earliest known sub-Saharan figurative art is about 26,000 years old. This art is both more advanced (it actually looks like art) and more abundant than its predecessors–the Sungir burial, dated to around 30,000-34,000 BC, for example, contains over 13,000 beads–a stark contrast to Blombos’s 70.

722px-homo_sapiens_lineage-svgIf a specific event triggered the simultaneous development of figurative art–and other aspects of behavioral modernity–in four different parts of the world, that event would logically have occurred before those groups split up. The timing of our interbreeding with Neanderthals–“In Eurasia, interbreeding between Neanderthals and Denisovans  with modern humans took place several times between about 100,000 and 40,000 years ago, both before and after the recent out-of-Africa migration 70,000 years ago”–is therefore temporaly perfect.

Subsequent back-migration could have then carried the relevant Neanderthal genomes into Africa–for regardless of where or how behavioral modernity started, all humans now have it.

So what do you think? Did we talk the Neanderthals to death? Did we get the gene for talking from the Neanderthals? Did we out-think them? Or did we just carry some disease or parasite that wiped them out? Or did they wipe themselves out via maternal death in labor, due to their enormous skulls?

(As for FOXP2, it appears that the version found in humans and Neanderthals is slightly different, so I find it a little doubtful that we got it from them.)

A couple of interesting quotes:

In several places, most clearly in central and southwestern France and part of northern Spain, we find a tool tradition that lasted from about 35,000 to 28,000 years ago (the Chatelperronian) that appears to combine some of the techniques of the Neanderthals … with those of modern humans. … Most important, there are several skeletons clearly associated with the Chatelperronian industry, and all are Neanderthal. This strongly suggests that there were interactions between the populations, enough that the Neanderthals learned some useful techniques from modern humans.

The smoking gene?

P. D. Evans and his colleagues at the University of Chicago looked at microcephalin (MCPH1), a very unusual gene that regulates brain size. They found that most people today carry a version that is quite uniform, suggesting that it originated recently. At the same time, it is very different from other, more varied versions found  at the same locus in humans today, all of which have many single-nucleotide differences among them. More than that, when there are several different versions of a gene at some locus, we normally find some intermediate versions created by recombination, that is, by chromosomes occasionally breaking and recombining. In the case of the unusual gene (called D for “derived”) at the microcephalin locus, such recombinants are very rare: It is as if the common, highly uniform version of microcephalin simply hasn’t been in the human race all that long in spite of the high frequency of the new version in many human populations. The researchers estimated that it appeared about 37,000 years ago (plus or minus a few tens of thousands of years.) And if it did show up then, Neanderthals are a reasonable, indeed likely, source.

So far as I know (and I looked it up a few weeks ago) no one has yet found microcephalin D in Neanderthals–and the date of 37,000 years ago sounds a bit too recent. However, we haven’t actually genotyped that many Neanderthals (it’s hard to find good 40,000 year old DNA), so we might just not have found it yet–and the date might simply be wrong.

It’s a remarkable genetic finding, even if it didn’t involve Neanderthals–and it might be simpler to dispense with other standards and define Homo sapiens as starting at this point.

On a related note, here’s a bit from Wikipedia about the ASPM gene:

A new allele (version) of ASPM appeared sometime between 14,100 and 500 years ago with a mean estimate of 5,800 years ago. The new allele has a frequency of about 50% in populations of the Middle East and Europe, it is less frequent in East Asia, and has low frequencies among Sub-Saharan African populations.[12] It is also found with an unusually high percentage among the people of Papua New Guinea, with a 59.4% occurrence.[13]

The mean estimated age of the ASPM allele of 5,800 years ago, roughly correlates with the development of written language, spread of agriculture and development of cities.[14] Currently, two alleles of this gene exist: the older (pre-5,800 years ago) and the newer (post-5,800 years ago). About 10% of humans have two copies of the new ASPM allele, while about 50% have two copies of the old allele. The other 40% of humans have one copy of each. Of those with an instance of the new allele, 50% of them are an identical copy.[15] The allele affects genotype over a large (62 kbp) region, a so called selective sweep which signals a rapid spread of a mutation (such as the new ASPM) through the population; this indicates that the mutation is somehow advantageous to the individual.[13][16]

Testing the IQ of those with and without new ASPM allele has shown no difference in average IQ, providing no evidence to support the notion that the gene increases intelligence.[16][17][18] However statistical analysis has shown that the older forms of the gene are found more heavily in populations that speak tonal languages like Chinese or many Sub-Saharan African languages.[19]

We still have so much to discover.

Book Club: The 10,000 Year Explosion pt 1

 

5172bf1dp2bnl-_sx323_bo1204203200_For most of he last century, the received wisdom in the social sciences has been that human evolution stopped a long time ago–in the most up-to-date version, before modern humans expanded out of Africa some 50,000 years ago. This implies that human minds must be the same everywhere–the “psychic unity of mankind.” It would certainly make life simpler if it were true.

Thus Cochran and Harpending fire the opening salvo of  The 10,000 Year Explosion: how Civilization Accelerated Human Evolution. (If you haven’t finished the book yet, don’t worry–we’ll discuss one chapter a week, so you have plenty of time.)

The book’s main thesis–as you can guess by reading the title–is that human evolution did not halt back in the stone age, but has accelerated since then.

I’ve been reading Greg and Henry’s blog for years (now Greg’s blog, since Henry sadly passed away.) If you’re a fan of the blog, you’ll like the book, but if you follow all of the latest human genetics religiously, you might find the book a bit redundant. Still, it is nice to have many threads tied together in one place–and in Greg & Henry’s entertaining style. (I am about halfway through the book as of this post, and so far, it has held up extremely well over the years since it was published.)

Chapter One: Conventional Wisdom explains some of the background science and history necessary to understand the book. Don’t worry, it’s not complicated (though it probably helps if you’ve seen this before.)

A lot of of our work could be called “genetic history.” … This means that when a state hires foreign mercenaries, we are interested in their numbers, their geographic origin, and the extent to which they settled down and mixed with the local population. We don’t much care whether they won their battles, as long as they survived and bred. …

For an anthropologist it might be important to look at how farmers in a certain region and time period lived; for us, as genetic historians, the interesting thing is how natural selection allowed agriculture to come about to begin with, and how the pressures of an agricultural lifestyle allowed changes in the population’s genetic makeup to take root and spread.

One of the things I find fascinating about humans is that the agricultural revolution happened more or less independently in 11 different places, all around 10,000 years ago. There’s a little variation due to local conditions and we can’t be positive that the Indus Valley didn’t have some influence on Mesopotamia and vice versa, but this is a remarkable convergence. Homo sapiens are estimated to have been around for about 200-300,000 years, (and we were predated by a couple million years of other human ancestor-species like Homo erectus)  but for the first 280,000 years or so of our existence no one bothered to invent agriculture. Then in the span of a few thousand years, suddenly it popped up all over the darn place, even in peoples like the Native Americans who were completely isolated from developments over in Asia and Africa.

This suggests to me that some process was going on simultaneously in all of these human populations–a process that probably began back when these groups were united and then progressed at about the same speed, culminating in the adoption of agriculture.

One possibility is simply that humans were hunting the local large game, and about 10,000 years ago, they started running out. An unfortunate climactic event could have pushed people over the edge, reducing them from eating large, meaty animals to scrounging for grass and tubers.

Another possibility is that human migrations–particularly the Out of Africa Event, but even internal African migrations could be sufficient–caused people to become smarter as they encountered new environments, which allowed them to make the cognitive leap from merely gathering food to tending food.

A third possibility, which we will discuss in depth next week, is that interbreeding with Neanderthals and other archaic species introduced new cognitive features to humanity.

And a fourth, related possibility is that humans, for some reason, suddenly developed language and thus the ability to form larger, more complex societies with a division of labor, trade, communication, and eventually agriculture and civilization.

We don’t really know when language evolved, since the process left behind neither bones nor artifacts, but if it happened suddenly (rather than gradually) and within the past 300,000 years or so, I would mark this as the moment Homo sapiens evolved.

While many animals can understand a fair amount of language (dogs, for instance) and some can even speak (parrots,) the full linguistic range of even the most intelligent apes and parrots is still only comparable to a human toddler. The difference between human language abilities and all other animals is stark.

There is great physical variation in modern humans, from Pygmies to Danes, yet we can all talk–even deaf people who have never been taught sign language seek to communicate and invent their own sign language more complex and extensive than that of the most highly trained chimps. Yet if I encountered a group of “humans” that looked just like some of us but fundamentally could not talk, could not communicate or understand language any more than Kanzi the Bonobo, I could not count them members of my species. Language is fundamental.

But just because we can all speak, that does not mean we are all identical in other mental ways–as you well know if you have ever encountered someone who is inexplicably wrong about EVERYTHING here on the internet.

But back to the book:

We intend to make the case that human evolution has accelerated int he past 10,000 years, rather than slowing or stopping, and is now happening about 100 times faster than its long term average over the 6 million years of our existence.

A tall order!

220px-San_tribesman
Some anthropologists refer to Bushmen as “gracile,” which means they are a little shorter than average Europeans and not stockily built

To summarize Cochran and Harpending’s argument: Evolution is static when a species has already achieved a locally-optimal fit with its environment, and the environment is fairly static.

Human environments, however, have not been static for the past 70,000 years or so–they have changed radically. Humans moved from the equator to the polar circle, scattered across deserts and Polynesian islands, adapting to changes in light, temperature, disease, and food along the way.

The authors make a fascinating observation about hunting strategies and body types:

…when humans hunted big game 100,000 years ago, they relied on close-in attacks with thrusting spears. Such attacks were highly dangerous and physically taxing, so in those days, hunters had to be heavily muscled and have thick bones. That kind of body had its disadvantages–if nothing else, it required more food–but on the whole, it was the best solution in that situation. … but new weapons like the atlatl (a spearthrower) and the bow effectively stored muscle-generated energy, which meant that hunters could kill big game without big biceps and robust skeletons. Once that happened, lightly built people, who were better runners and did not need as much food, became competitively superior. The Bushmen of southern Africa…are a small, tough, lean people, less than five feet tall. It seems likely that the tools made the man–the bow begat the Bushmen.

Cro-magnons (now called “European Early Modern Humans” by people who can’t stand a good name,) were of course quite robust, much more so than the gracile Bushmen (Aka San.) Cro-magnons were not unique in their robustness–in fact all of our early human ancestors seem to have been fairly robust, including the species we descended from, such as Homo heidelbergensis and Homo ergaster. (The debate surrounding where the exact lines between human species should be drawn is long and there are no definite answers because we don’t have enough bones.)

We moderns–all of us, not just the Bushmen–significantly less robust than our ancestors. Quoting from a review of Manthropology: The Science of the Inadequate Modern Male:

Twenty thousand years ago six male Australian Aborigines chasing prey left footprints in a muddy lake shore that became fossilized. Analysis of the footprints shows one of them was running at 37 kph (23 mph), only 5 kph slower than Usain Bolt was traveling at when he ran the 100 meters in world record time of 9.69 seconds in Beijing last year. But Bolt had been the recipient of modern training, and had the benefits of spiked running shoes and a rubberized track, whereas the Aboriginal man was running barefoot in soft mud. …

McAllister also presents as evidence of his thesis photographs taken by a German anthropologist early in the twentieth century. The photographs showed Tutsi initiation ceremonies in which young men had to jump their own height in order to be accepted as men. Some of them jumped as high as 2.52 meters, which is higher than the current world record of 2.45 meters. …

Other examples in the book are rowers of the massive trireme warships in ancient Athens who far exceeded the capabilities of modern rowers, Roman soldiers who completed the equivalent of one and a half marathons a day, carrying equipment weighing half their body weight …

McAllister attributes the decline to the more sedentary lifestyle humans have lived since the industrial revolution, which has made modern people less robust than before since machines do so much of the work. …

According to McAllister humans have lost 40 percent of the shafts of the long bones because they are no longer subjected to the kind of muscular loads that were normal before the industrial revolution. Even our elite athletes are not exposed to anywhere near the challenges and loads that were part of everyday life for pre-industrial people.

Long story short: humans are still evolving. We are not static; our bodies do not look like they did 100,000 years ago, 50,000 years ago, nor even 1,000 years ago. The idea that humans could not have undergone significant evolution in 50–100,000 years is simply wrong–dogs evolved from wolves in a shorter time.

Dogs are an interesting case, for despite their wide variety of physical forms, from Chihuahuas to Great Danes, from pugs to huskies, we class them all as dogs because they all behave as dogs. Dogs can interbreed with with wolves and coyotes (and wolves and coyotes with each other,) and huskies look much more like wolves than like beagles, but they still behave like dogs.

The typical border collie can learn a new command after 5 repetitions and responds correctly 95% of the time, whereas a basset hound takes 80-100 repetitions to achieve a 25 percent accuracy rate.

I understand why border collies are smart, but why are bassets so stupid?

Henry and Greg’s main argument depends on two basic facts: First, the speed of evolution–does evolution work fast enough to have caused any significant changes in human populations since we left Africa?

How fast evolution works depends on the pressure, of course. If everyone over 5 feet tall died tomorrow, the next generation of humans would be much shorter than the current one–and so would their children.

The end of the Ice Age also brought about a global rise in sea level. … As the waters rose, some mountains became islands.. These islands were too small to sustain populations of large predators, and in their absence the payoff for being huge disappeared. … Over a mere 5,000 years, elephants shrank dramatically, from an original height of 12 feet to as little as 3 feet.  It is worth noting that elephant generations are roughly twenty years long, similar to those of humans.

We have, in fact, many cases of evolution happening over a relatively short period, from dogs to corn to human skin tone.

No one is arguing about the evolution of something major, like a new limb or an extra spleen–just the sorts of small changes to the genome that can have big effects, like the minor genetic differences that spell the difference between a wolf and a poodle.

Second, human populations need to be sufficiently distinct–that is, isolated–for traits to be meaningfully different in different places. Of course, we can see that people look different in different places. This alone is enough to prove the point–people in Japan have been sufficiently isolated from people in Iceland that genetic changes affecting appearance haven’t spread from one population to the other.

What about the claim that “There’s more variation within races than between them”?

This is an interesting, non-intuitive claim. It is true–but it is also true for humans and chimps, dogs and wolves. That is, there is more variation within humans than between humans and chimps–a clue that this factoid may not be very meaningful.

Let’s let the authors explain:

Approximately 85 percent of human genetic variation is within-group rather than between groups, while 15 percent is between groups. … genetic variation is distributed in a similar way in dogs: 70 percent of genetic variation is within-breed, while 30 percent is between-breed. …

Information about the distribution of genetic variation tells you essentially nothing about the size or significance of trait differences. The actual differences we observe in height, weight, strength, speed, skin color, and so on are real: it is not possible to argue them away. …

It turns out that the correlations between these genetic differences matter. … consider malaria resistance in northern Europeans and central Africans. Someone from Nigeria may ave the sickle-cell mutation (a known defense against falciparum malaria,) while hardly anyone from northern Europe does, but even the majority of Nigerians who don’t carry the sickle cell are far more resistant to malaria than any Swede. They have malaria-defense versions of many genes. That is the typical pattern you get from natural selection–correlated changes in a population, change in the same general direction, all a response to the same selection pressure.

In other words: suppose a population splits and goes in two different directions. Population A encounters no malaria, and so develops no malria-resistant genes. Population B encounters malaria and quickly develops a hundred different mutations that all resist malaria. If some members of Population B have the at least some of the null variations found in Population A, then there’s very little variation between Pop A and B–all of Pop A’s variants are in fact found in Pop B. Meanwhile, there’s a great deal of variation within Pop B, which has developed 100 different ways to resist malaria. Yet the genetic differences between those populations is very important, especially if you’re in an area with malaria.

What if the differences between groups is just genetic drift?

Most or all of the alleles that are responsible for obvious differences in appearance between populations–such as the gene variants causing light skin color or blue eyes–have undergone strong selection. In these cases, a “big effect” on fitness means anything from a 2 or 3 percent increase on up. Judging from the rate at which new alleles have increased in frequency, this must be the case for genes that determine skin color (SLC24A5), eye color (HERC2), lactose tolerance (LCT), and dry earwax (ABCC11), of all things.

maps-europelighteyesIn fact, modern phenotypes are surprisingly young–blond hair, white skin, and blue eyes all evolved around a mere 10,000 years ago–maybe less. For these traits to have spread as far as they have, so quickly, they either confer some important evolutionary benefit or happen to occur in people who have some other evolutionarily useful trait, like lactose tolerance:

Lactose-tolerant Europeans carry a particular mutation that is only a few thousand years old, and so those Europeans also carry much of the original haplotype. In fact, the shared haplotype around that mutation is over 1 million bases long.

Recent studies have found hundreds of cases of long haplotypeles indicating recent selection: some have reached 100 percent frequency, more have intermediate frequencies, and most are regional. Many are very recent: The rate of origination peaks at around 5,500 years ago in the European and Chinese samples, and at about 8,500 years ago in the African sample.

(Note that the map of blue eyes and the map of lactose tolerance do not exactly correlate–the Baltic is a blue eyes hotspot, but not particularly a lactose hotspot–perhaps because hunter-gatherers hung on longer here by exploiting rich fishing spots.)

Could these explosions at a particular date be the genetic signatures of large conquering events? 5,5000 years ago is about right for the Indo-European expansion (perhaps some similar expansion happened in the East at the same time.) 8,000 years ago seems too early to have contributed to the Bantu Expansion–did someone else conquer west Africa around 8,500 years ago?

Let’s finish up:

Since we have sequenced the chimpanzee genome, we know the size of the genetic difference between chimps and humans. Since we also have decent estimates of the length of time since the two species split, we know the long-term rate of genetic change. The rate of change over the past few thousand years is far greater than this long-term rate over the past few million years, on the order of 100 times greater. …

The ultimate cause of this accelerated evolution was the set of genetic changes that led to an increased ability to innovate. …

Every major innovation led to new selective pressures, which led to more evolutionary change, and the most spectacular of those innovations was the development of agriculture.

Innovation itself has increased dramatically. The Stone Age lasted roughly 3.4 million years (you’ll probably note that this is longer than Homo sapiens has been around.) The most primitive stone tradition, the Oldowan, lasted for nearly 3 million of those 3.4; the next period, the Acheulean, lasted for about 1.5 million years. (There is some overlap in tool traditions.) By contrast, the age of metals–bronze, copper, iron, etc–has been going on for a measly 5,500 years, modern industrial society is only a couple of centuries old–at most.

What triggered this shift from 3 million years of shitty stone tools with nary an innovation in sight to a society that split the atom and put a man on the moon? And once culture was in place, what traits did it select–and what traits are we selecting for right now?

Is the singularity yet to come, or did we hit it 10,000 years ago–or before?

 

By the way, if you haven’t started the book yet, I encourage you to go ahead–you’ve plenty of time before next week to catch up.

Book Club Pick: The 10,000 Year Explosion

5172bf1dp2bnl-_sx323_bo1204203200_Our next Book Club pick is Cochran and Harpending’s The 10,000 Year Explosion: How Civilization Accelerated Human Evolution. From the book’s description on Amazon:

Scientists have long believed that the “great leap forward” that occurred some 40,000 to 50,000 years ago in Europe marked end of significant biological evolution in humans. In this stunningly original account of our evolutionary history, top scholars Gregory Cochran and Henry Harpending reject this conventional wisdom and reveal that the human species has undergone a storm of genetic change much more recently. Human evolution in fact accelerated after civilization arose, they contend, and these ongoing changes have played a pivotal role in human history. They argue that biology explains the expansion of the Indo-Europeans, the European conquest of the Americas, and European Jews’ rise to intellectual prominence. …

I just received the book, so I haven’t read it yet, but I’ve been a big fan of Greg and Henry’s blog (now Greg’s blog, since Henry passed away,) for a long time. I expect to finish reading and get the relevant discussion posts up, therefore, in about two months–I’ll update the time frame as we get closer.

Please let me know if you prefer short form discussion (like our discussion of Kurzweil’s How to Build a Mind,) or long form discussion (like Auerswald’s The Code Economy,) or something in between.